Using Stata with PHASE and Haploview: Commands for importing and exporting data

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Modern genetics studies require the use of many specialty software programs for various aspects of the statistical analysis. PHASE is a program often used to reconstruct haplotypes from genotype data, and Haploview is a program often used to visualize and analyze single nucleotide polymorphism data. Three new commands are described for performing these three steps: 1) exporting genotype data stored in Stata to PHASE, 2) importing the resulting inferred haplotypes back into Stata, and 3) exporting the haplotype/single nucleotide polymorphism data from Stata to Haploview.

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http://hdl.handle.net/123456789/589453

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https://ageconsearch.umn.edu/record/159025/files/sjart_st0199.pdf

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University of Minnesota