Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium.

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dc.contributorPAULA RENATA ALVES DA SILVA, UFRRJ; JEAN LUIZ SIMOES DE ARAUJO, CNPAB; MARCIA SOARES VIDAL, CNPAB; LEONARDO MAGALHÃES CRUZ, UFPR; EMANUEL MALTEMPI DE SOUZA, UFPR; JOSE IVO BALDANI, CNPAB.
dc.creatorSILVA, P. R. A.
dc.creatorARAUJO, J. L. S. de
dc.creatorVIDAL, M. S.
dc.creatorCRUZ, L. M.
dc.creatorSOUZA, E. M. de
dc.creatorBALDANI, J. I.
dc.date2018-05-09T00:52:08Z
dc.date2018-05-09T00:52:08Z
dc.date2017-11-13
dc.date2018
dc.date2018-05-09T00:52:08Z
dc.date.accessioned2026-06-30T22:59:01Z
dc.descriptionParaburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidating the mechanisms involved in its interaction mainly with Poaceae. A genome size of approximately 8.75 Mb containing 7844 protein coding genes distributed in 526 subsystems was de novo assembled with ABySS and annotated by RAST. Genes related to the nitrogen fixation process, the secretion systems (I, II, III, IV, and VI), and related to a variety of metabolic traits, such as metabolism of carbohydrates, amino acids, vitamins, and proteins, were detected, suggesting a broad metabolic capacity and possible adaptation to plant association.
dc.identifierBrazilian Journal of Microbiology, v. 49, n. 2, p. 2010-2011, Apr./Jun. 2018.
dc.identifierhttp://www.alice.cnptia.embrapa.br/alice/handle/doc/1079611
dc.identifierhttps://doi.org/10.1016/j.bjm.2017.07.005
dc.identifier.urihttp://hdl.handle.net/123456789/371854
dc.languageeng
dc.rightsopenAccess
dc.subjectDiazotrophic
dc.subjectNext generation sequencing
dc.subjectNitrogen fixing
dc.subjectSecretion system
dc.titleDraft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium.
dc.typeArtigo de periódico

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Embrapa Agrobiologia (CNPAB)