Genome-wide association study on growth traits in Colombian Hair Sheep

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dc.creatorYineth Alexandra Palacios Erazo
dc.creatorManuel Fernando Ariza Botero
dc.creatorMoris de Jesús Bustamante Yánez
dc.creatorÓscar David Vergara Garay
dc.creatorLuz Ángela Álvarez Franco
dc.date2024
dc.date.accessioned2026-07-07T03:29:41Z
dc.descriptionThe Colombian hair sheep have characteristics of great interest, among the following: high capacity for adaptation, good fertility, high prolifically, and low presence of diseases, which have been little studied. Currently, genome-wide association studies (GWAS) have been widely used to detect and locate candidate genes. However, in sheep, there is a low number of investigations carried out in GWAS, because the available information is limited, compared to that of other species. This research aimed to conduct a genome-wide association study on muscle growth traits using the Illumina OvineSNPs50 BeadChip array. A GWAS using 54.241 single nucleotide polymorphisms (SNPs) was conducted in Ethiopian (44 individuals), Sudan (63), and Pelibuey (60) breeds of Creole hair sheep to evaluate eight growth traits. Quality control was performed using a linear regression model in PLINK. Moreover, a functional analysis was done in the KEGG database using the Ovis aries (sheep) genome v.3.1. In total, 44.396 SNPs that passed quality control were used for the analysis. The 10 most significant SNPs were identified for each trait. The functional analysis allowed the annotating of four candidate genes, namely CEP135, EMCN, PAM, and PIAS2, as the most relevant genes for the traits assessed. Additionally, 27 genes associated with phenotypic traits were considered promising and could also be influencing growth traits. This is the first GWAS on Colombian hair sheep to report genomic traits associated with muscle growth traits. Four candidate genes (CEP135, EMCN, PAM, and PIAS2) associated with eight growth traits were identified by genome-wide association in colombian hair sheep.
dc.formatapplication/pdf
dc.identifier0304-2847
dc.identifierhttps://www.redalyc.org/articulo.oa?id=179977660010
dc.identifierhttps://www.redalyc.org/journal/1799/179977660010/
dc.identifierhttps://www.redalyc.org/journal/1799/179977660010/html/
dc.identifierhttps://www.redalyc.org/journal/1799/179977660010/179977660010.epub
dc.identifierhttps://www.redalyc.org/journal/1799/179977660010/movil
dc.identifier10.15446/rfnam.v77n1.105408
dc.identifier.urihttp://hdl.handle.net/123456789/435304
dc.languageen
dc.publisherUniversidad Nacional de Colombia
dc.relationhttp://www.redalyc.org/revista.oa?id=1799
dc.rightsRevista Facultad Nacional de Agronomía - Medellín
dc.sourceRevista Facultad Nacional de Agronomía - Medellín (Colombia) Num.1 Vol.77
dc.subjectAgrociencias
dc.titleGenome-wide association study on growth traits in Colombian Hair Sheep
dc.typeartículo científico

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Revista Facultad Nacional de Agronomía - Universidad Nacional de Colombia