Population-scale multi-omics analysis reveals diverse phenotypic impacts of lncRNAs in rice

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dc.creatorGao, Ge
dc.creatorLou, Danjing
dc.creatorLi, Yunpeng
dc.creatorZhang, Chao
dc.creatorKan, Baolin
dc.creatorWen, Hao
dc.creatorWen, Siyu
dc.creatorShu, Jun
dc.creatorGuo, Wenlong
dc.creatorQiao, Weihua
dc.creatorYang, Qingwen
dc.creatorPeng, Youlin
dc.creatorOlsen, Kenneth M.
dc.creatorQian, Qian
dc.creatorZheng, Xiaoming
dc.date2026-04-06
dc.date2026-04-30T08:27:48Z
dc.date.accessioned2026-06-27T04:12:57Z
dc.description"Dear Editor, Long noncoding RNAs (lncRNAs) are emerging as critical regulators of plant growth and development, and their expression orchestrates and integrates multiple processes underlying vital components of the phenotype, including stress adaptation, aspects of phenotypic evolution, and speciation.1 In plants, lncRNA-mediated gene regulation remains poorly understood, even in rice, one of the most important staple foods and a model crop species. In this study, we performed strand-specific RNA sequencing of 188 accessions representing different developmental stages of cultivated (Oryza sativa ssp. japonica and indica) and wild rice (O. rufipogon). We identified a total of 57,162 lncRNAs in the rice genome, established a comprehensive lncRNA annotation resource, and analyzed the molecular mechanisms by which lncRNAs regulate gene expression and influence key agronomic traits. Subsequent functional validation suggested that the lncRNA LBR5 may confer resistance to bacterial blight. This study advances our understanding of the role of the noncoding genome in shaping phenotypic diversity and evolutionary adaptation in rice."
dc.identifierhttps://hdl.handle.net/10568/182722
dc.identifier.urihttp://hdl.handle.net/123456789/25390
dc.languageen
dc.publisherSpringer Nature
dc.rightsLimited Access
dc.sourceGao, Ge, Danjing Lou, Yunpeng Li, Chao Zhang, Baolin Kan, Hao Wen, Siyu Wen, Jun Shu, Wenlong Guo, Weihua Qiao, Qingwen Yang, Youlin Peng, Kenneth M. Olsen, Qian Qian, Xiaoming Zheng (2026). Population-scale multi-omics analysis reveals diverse phenotypic impacts of lncRNAs in rice. Cell Research.
dc.subjectrice
dc.subjectplant growth
dc.subjectoryza rufipogon
dc.subjectrna
dc.subjectplant growth regulator
dc.subjectgenomes
dc.subjectgene expression
dc.subjectplant diseases
dc.subjectgenetic variation
dc.titlePopulation-scale multi-omics analysis reveals diverse phenotypic impacts of lncRNAs in rice
dc.typeJournal Article

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Instituto Internacional de Investigación del Arroz (IRRI)