High quality draft genome of Brucella abortus strain Col-B012, isolated from a Holstein cattle in Nariño Colombia, brings new insights into the diagnosis and the epidemiology of biovar 4 strains

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dc.audienceInvestigador
dc.contributorMatthew, Jackson
dc.coverageColombia
dc.creatorPacheco Montealegre, Mauricio
dc.creatorPatiño Burbano, Rocio Esperanza
dc.creatorTorres Higuera, Ligia Denise
dc.creatorJimenez Velasquez, Sabrina del Carmen
dc.creatorRodriguez Vitola, Jose Luis
dc.creatorCaro Quintero, Alejandro
dc.date2024-07-31T14:41:28Z
dc.date2024-07-31T14:41:28Z
dc.date2017-11-17
dc.date2017
dc.date.accessioned2026-06-27T04:32:59Z
dc.descriptionBrucellosis is a commonly diagnosed zoonosis that causes infertility and abortion in cattle, it is acquired from handling of infected animals or consuming contaminated milk or milk products. In Colombia, it is classified as prevention and control disease, despite its relevance little is known about the origin, epidemiology and the genetic constituents of the strains circulating in dairy farms. Here we present the draft genome of B. abortus Col-B012, an isolate obtained from a female Holstein belonging to a dairy farm in Nariño, Colombia. This genome comprises 3,234,714 bp and 3,018 predicted protein-encoding genes. Using comparative genomics and phylogenetic analysis, we found that the strain Col-B012 clustered with known biovar 4 variants. The analysis of the core genesallowed the identification of polymorphisms only present in biovar 4 genomes, these alleles might be associated with the phenotypic and pathogenic characteristics of the group and are proposed as possible targets for identification by PCR. The sequencing of B. abortus Col-B012 genome provides important insights to improve the diagnosis and the epidemiology of this disease and represents the first report of the biovar 4 in Colombia.
dc.descriptionMinisterio de Agricultura y Desarrollo Rural - MADR
dc.descriptionGanadería bovina
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dc.identifierhttps://peerj.com/preprints/3416/
dc.identifier2167-8359
dc.identifierhttp://hdl.handle.net/20.500.12324/39731
dc.identifier10.7287/peerj.preprints.3416v1
dc.identifierreponame:Biblioteca Digital Agropecuaria de Colombia
dc.identifierinstname:Corporación colombiana de investigación agropecuaria AGROSAVIA
dc.identifier.urihttp://hdl.handle.net/123456789/31075
dc.languageeng
dc.publisherPeerj
dc.relationPeerj
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dc.rightsAttribution-NonCommercial-ShareAlike 4.0 International
dc.rightshttp://creativecommons.org/licenses/by-nc-sa/4.0/
dc.sourcePeerJ Preprints; Vol.1, Núm.5 (2017): PeerJ Preprintse (Nov);p. 1-27
dc.subjectBrucellosis
dc.subjectBiovar
dc.subjectGenome
dc.subjectDiagnosis
dc.subjectCoparative genomics
dc.subjectEnfermedades de los animales - L73
dc.subjectGanado bovino
dc.subjectEnfermedades de los animales
dc.subjectBrucelosis
dc.subjectEpidemiología
dc.subjectGanadería y especies menores
dc.subjecthttp://aims.fao.org/aos/agrovoc/c_1391
dc.subjecthttp://aims.fao.org/aos/agrovoc/c_426
dc.subjecthttp://aims.fao.org/aos/agrovoc/c_1122
dc.subjecthttp://aims.fao.org/aos/agrovoc/c_2615
dc.thumbnailhttps://repository.agrosavia.co/bitstreams/7212baea-1cd2-4994-8249-2a5dec5d5bbf/download
dc.titleHigh quality draft genome of Brucella abortus strain Col-B012, isolated from a Holstein cattle in Nariño Colombia, brings new insights into the diagnosis and the epidemiology of biovar 4 strains
dc.titleHigh quality draft genome of Brucella abortus strain Col-B012, isolated from a Holstein cattle in Nariño Colombia, brings new insights into the diagnosis and the epidemiology of biovar 4 strains
dc.typeArtículo científico

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