BrAPI v2: Real-world applications for data integration and collaboration in the breeding and genetics community

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dc.creatorSelby, Peter
dc.creatorAbbeloos, Rafael
dc.creatorAdam-Blondon, Anne-Francoise
dc.creatorAgosto-Pérez, Francisco J.
dc.creatorAlaux, Michael
dc.creatorAlic, Isabelle
dc.creatorAl-Shamaa, Khaled
dc.creatorAparicio, Johan Steven
dc.creatorBacklund, Jan Erik
dc.creatorBatac, Aldrin
dc.creatorBeier, Sebastian
dc.creatorBesombes, Gabriel
dc.creatorBoizet, Alice
dc.creatorBrouwer, Matthijs
dc.creatorCasstevens, Terry
dc.creatorCharleroy, Arnaud
dc.creatorCorak, Keo
dc.creatorCourtney, Chaney
dc.creatorCrimi, Mariano
dc.creatorDavuluri, Gouripriya
dc.creatorde Sousa, Kauê
dc.creatorDestin, Jeremy
dc.creatorDhondt, Stijn
dc.creatorDhungana, Ajay
dc.creatorDroesbeke, Bert
dc.creatorFeser, Manuel
dc.creatorFlores-Gonzalez, Mirella
dc.creatorGuignon, Valentin
dc.creatorHabito, Corina
dc.creatorHallab, Asis
dc.creatorHershberger, Jenna
dc.creatorHok, Puthick
dc.creatorHulse-Kemp, Amanda M
dc.creatorJohnson, Lynn Carol
dc.creatorJung, Sook
dc.creatorKersey, Paul
dc.creatorKilian, Andrzej
dc.creatorKönig, Patrick
dc.creatorKumar, Suman
dc.creatorLamos-Sweeney, Josh
dc.creatorLang, Laszlo
dc.creatorLange, Matthias
dc.creatorLaporte, Marie-angelique
dc.creatorLee, Taein
dc.creatorLe Floch, Erwan
dc.creatorLópez, Francisco
dc.creatorMadriz, Brandon
dc.creatorMain, Dorrie
dc.creatorMarsella, Marco
dc.creatorMarty, Maud
dc.creatorMichotey, Célia
dc.creatorMiller, Zachary
dc.creatorMilne, Iain
dc.creatorMueller, Lukas A
dc.creatorNderitu, Moses
dc.creatorNeveu, Pascal
dc.creatorPalladino, Nick
dc.creatorParsons, Tim
dc.creatorPommier, Cyril
dc.creatorRami, Jean-François
dc.creatorRaubach, Sebastian
dc.creatorRife, Trevor
dc.creatorRobbins, Kelly
dc.creatorRouard, Mathieu
dc.creatorRuff, Joseph
dc.creatorSempéré, Guilhem
dc.creatorShah, Romil Mayank
dc.creatorShaw, Paul
dc.creatorSmith, Becky
dc.creatorSoldevilla, Nahuel
dc.creatorTireau, Anne
dc.creatorTovar, Clarysabel
dc.creatorUszynski, Grzegorz
dc.creatorVega, Vivian Bass
dc.creatorWeise, Stephan
dc.creatorYarnes, Shawn C
dc.creatorThe BrAPI Consortium
dc.date2025-01-18
dc.date2025-10-01T10:20:55Z
dc.date2025-10-01T10:20:55Z
dc.date.accessioned2026-06-27T13:27:46Z
dc.descriptionPopulation growth and the impacts of climate change are placing increasing pressure on global agriculture and breeding programmes. Recent advancements in phenotyping techniques, genotyping technologies, and predictive modelling are accelerating genetic gains in breeding programmes, helping researchers and breeders develop improved crops more efficiently. However, these advancements have also led to an overwhelming torrent of fragmented data, creating significant challenges in data integration and management. To address this issue, the Breeding Application Programming Interface (BrAPI) project was established as a standardized data model for breeding data. BrAPI is an international, community-driven effort that facilitates interoperability among databases and tools, improving the sharing and interpretation of breeding-related data. This open-source standard is software-agnostic and can be used by anyone interested in breeding, phenotyping, germplasm, genotyping, and agronomy data management. This manuscript provides an overview of the BrAPI project, highlighting the significant progress made in the development of the data standard and the expansion of its community. It also presents a showcase of the wide variety of BrAPI-compatible tools that have been built to enhance breeding and research activities, demonstrating how the project is advancing agricultural innovation and data management practices.
dc.formatapplication/pdf
dc.identifierhttps://hdl.handle.net/10568/176764
dc.identifier.urihttp://hdl.handle.net/123456789/60152
dc.languageen
dc.publisherOxford University Press
dc.rightsOpen Access
dc.sourceSelby, P.; Abbeloos, R.; Adam-Blondon, A-F.; Agosto-Pérez, F.J.; Alaux, M.; Alic, I.; Al-Shamaa, K.; Aparicio, J.S.; Backlund, J.E.; Batac, A.; Beier, S.; Besombes, G.; Boizet, A.; Brouwer, M.; Casstevens, T.; Charleroy, A.; Corak, K.; Courtney, C.; Crimi, M.; Davuluri, G.; De-Sousa, K.; Destin, J.; Dhondt, S.; Dhungana, A.; Droesbeke, B.; Feser, M.; Flores-Gonzalez, M.; Guignon, V.; Habito, C.; Hallab, A.; Hershberger, J.; Hok, P.; Hulse-Kemp, A.M.; Johnson, L.C.; Jung, S.; Kersey, P.; Kilian, A.; König, P.; Kumar, S.; Lamos-Sweeney, J.; Lang, L.; Lange, M.; Laporte, M-A.; Lee, T.; Le Floch, E.; López, F.; Madriz, B.; Main, D.; Marsella, M.; Marty, M.; Michotey, C.; Miller, Z.; Milne, I.; Mueller, L.A.; Nderitu, M.; Neveu, P.; Palladino, N.; Parsons, T.; Pommier, C.; Rami, J-F.; Raubach, S.; Rife, T.; Robbins, K.; Rouard, M.; Ruff, J.; Sempéré, G.; Shah, R.M.; Shaw, P.; Smith, B.; Soldevilla, N.; Tireau, A.; Tovar, C.; Uszynski, G.; Vega, V.B.; Weise, S.; Yarnes, S.C.; The BrAPI Consortium (2025) BrAPI v2: Real-world applications for data integration and collaboration in the breeding and genetics community. Database 2025: baaf048. ISSN: 1758-0463
dc.subjectgermplasm
dc.subjectdata collection
dc.subjectplant breeding
dc.subjectphenotyping
dc.subjectgenotyping
dc.subjectbioinformatics
dc.titleBrAPI v2: Real-world applications for data integration and collaboration in the breeding and genetics community
dc.typeJournal Article

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