Replication Data for: Genomic prediction of agronomic traits in common bean under environmental stress

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dc.creatorKeller, Beat
dc.creatorAriza-Suárez, Daniel
dc.creatorHoz, Juan Fernando de la
dc.creatorAparicio, Johan Steven
dc.creatorPortilla Benavides, Ana Elisabeth
dc.creatorBuendia, Hector Fabio
dc.creatorMayor, Victor Manuel
dc.creatorStuder, Bruno
dc.creatorRaatz, Bodo
dc.date2020
dc.date2020-03-30T00:10:06Z
dc.date2020-03-30T00:10:06Z
dc.date.accessioned2026-06-27T13:35:28Z
dc.descriptionThese datasets contain phenotypic and genotypic data of a panel of elite Andean breeding lines of common bean (Phaseolus vulgaris L.) from CIAT. This population has been tested in twelve yield trials carried out in Palmira and Darien (Colombia) between 2013 and 2018 to assess its performance under irrigated, drought and variable soil P conditions. These trials were laid out in the field with an alpha-lattice experimental design using two to three replicates, and a non-replicated trial in 2016. Meteorological data for these trials is also provided. Different agronomic traits were evaluated including Days to Flowering (DF), Days to Physiological Maturity (DPM), 100 seed weight (100SdW) and Yield (Yd). The agronomic performance of the population was modeled using linear mixed models with spatial correction. From these models, best linear unbiased estimators (BLUEs) and their corresponding standard errors (SE) were obtained. This population was genotyped by sequencing (GBS) using the ApeKI-based restriction digestion. The genotypic data is presented in a variant call format (VCF) file of 5,820 SNPs and 481 lines. The genotypic matrix was imputed using Beagle (v4.1). These datasets were used to test genomic prediction models on the panel in order to assess their prediction ability under different scenarios and parameter settings.
dc.identifierhttps://hdl.handle.net/10568/107888
dc.identifier.urihttp://hdl.handle.net/123456789/64183
dc.languageen
dc.publisherInternational Center for Tropical Agriculture
dc.rightsOpen Access
dc.sourceKeller, B.; Ariza-Suarez, D.; De la Hoz, J.; Aparicio, J.S.; Portilla Benavides, A.E.; Buendia, H.F.; Mayor, V.M.; Studer, B.; Raatz, B. (2020). Replication Data for: Genomic prediction of agronomic traits in common bean under environmental stress. https://doi.org/10.7910/DVN/XCD67U, Harvard Dataverse, V1, UNF:6:2ucpalum7jucY0dQs56Z3A== [fileUNF]
dc.subjectgenomic selection
dc.subjectplant breeding
dc.subjectdrought
dc.subjectphosphorus
dc.subjectbeans
dc.subjectfósforo
dc.subjectmejoramiento de plantas
dc.subjectsequía
dc.subjectselección asistida por marcadores
dc.subjectfrijol
dc.subjectagrobiodiversity
dc.subjectagrobiodiversidad
dc.titleReplication Data for: Genomic prediction of agronomic traits in common bean under environmental stress
dc.typeDataset

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