Genomic variation in 3,010 diverse accessions of Asian cultivated rice

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dc.creatorWang, Wensheng
dc.creatorMauleon, Ramil
dc.creatorHu, Zhiqiang
dc.creatorChebotarov, Dmytro
dc.creatorTai, Shuaishuai
dc.creatorWu, Zhichao
dc.creatorLi, Min
dc.creatorZheng, Tianqing
dc.creatorFuentes, Roven Rommel
dc.creatorZhang, Fan
dc.creatorMansueto, Locedie
dc.creatorCopetti, Dario
dc.creatorSanciangco, Millicent
dc.creatorPalis, Kevin Christian
dc.creatorXu, Jianlong
dc.creatorSun, Chen
dc.creatorFu, Binying
dc.creatorZhang, Hongliang
dc.creatorGao, Yongming
dc.creatorZhao, Xiuqin
dc.creatorShen, Fei
dc.creatorCui, Xiao
dc.creatorYu, Hong
dc.creatorLi, Zichao
dc.creatorChen, Miaolin
dc.creatorDetras, Jeffrey
dc.creatorZhou, Yongli
dc.creatorZhang, Xinyuan
dc.creatorZhao, Yue
dc.creatorKudrna, Dave
dc.creatorWang, Chunchao
dc.creatorLi, Rui
dc.creatorJia, Ben
dc.creatorLu, Jinyuan
dc.creatorHe, Xianchang
dc.creatorDong, Zhaotong
dc.creatorXu, Jiabao
dc.creatorLi, Yanhong
dc.creatorWang, Miao
dc.creatorShi, Jianxin
dc.creatorLi, Jing
dc.creatorZhang, Dabing
dc.creatorLee, Seunghee
dc.creatorHu, Wushu
dc.creatorPoliakov, Alexander
dc.creatorDubchak, Inna
dc.creatorUlat, Victor Jun
dc.creatorBorja, Frances Nikki
dc.creatorMendoza, John Robert
dc.creatorAli, Jauhar
dc.creatorLi, Jing
dc.creatorGao, Qiang
dc.creatorNiu, Yongchao
dc.creatorYue, Zhen
dc.creatorNaredo, Ma.Elizabeth B.
dc.creatorTalag, Jayson
dc.creatorWang, Xueqiang
dc.creatorLi, Jinjie
dc.creatorFang, Xiaodong
dc.creatorYin, Ye
dc.creatorGlaszmann, Jean-Christophe
dc.creatorZhang, Jianwei
dc.creatorLi, Jiayang
dc.creatorHamilton, Ruaraidh Sackville
dc.creatorWing, Rod A.
dc.creatorRuan, Jue
dc.creatorZhang, Gengyun
dc.creatorWei, Chaochun
dc.creatorAlexandrov, Nickolai
dc.creatorMcNally, Kenneth L.
dc.creatorLi, Zhikang
dc.creatorLeung, Hei
dc.date2018-05
dc.date2024-12-19T12:54:26Z
dc.date2024-12-19T12:54:26Z
dc.date.accessioned2026-06-27T04:07:45Z
dc.descriptionHere we analyse genetic variation, population structure and diversity among 3,010 diverse Asian cultivated rice (Oryza sativa L.) genomes from the 3,000 Rice Genomes Project. Our results are consistent with the five major groups previously recognized, but also suggest several unreported subpopulations that correlate with geographic location. We identified 29 million single nucleotide polymorphisms, 2.4 million small indels and over 90,000 structural variations that contribute to within- and between-population variation. Using pan-genome analyses, we identified more than 10,000 novel full-length protein-coding genes and a high number of presence–absence variations. The complex patterns of introgression observed in domestication genes are consistent with multiple independent rice domestication events. The public availability of data from the 3,000 Rice Genomes Project provides a resource for rice genomics research and breeding
dc.identifierhttps://hdl.handle.net/10568/164883
dc.identifier.urihttp://hdl.handle.net/123456789/22475
dc.languageen
dc.publisherSpringer
dc.rightsOpen Access
dc.sourceWang, Wensheng; Mauleon, Ramil; Hu, Zhiqiang; Chebotarov, Dmytro; Tai, Shuaishuai; Wu, Zhichao; Li, Min; Zheng, Tianqing; Fuentes, Roven Rommel; Zhang, Fan; Mansueto, Locedie; Copetti, Dario; Sanciangco, Millicent; Palis, Kevin Christian; Xu, Jianlong; Sun, Chen; Fu, Binying; Zhang, Hongliang; Gao, Yongming; Zhao, Xiuqin; Shen, Fei; Cui, Xiao; Yu, Hong; Li, Zichao; Chen, Miaolin; Detras, Jeffrey; Zhou, Yongli; Zhang, Xinyuan; Zhao, Yue; Kudrna, Dave; Wang, Chunchao; Li, Rui; Jia, Ben; Lu, Jinyuan; He, Xianchang; Dong, Zhaotong; Xu, Jiabao; Li, Yanhong; Wang, Miao; Shi, Jianxin; Li, Jing; Zhang, Dabing; Lee, Seunghee; Hu, Wushu; Poliakov, Alexander; Dubchak, Inna; Ulat, Victor Jun; Borja, Frances Nikki; Mendoza, John Robert; Ali, Jauhar; Li, Jing; Gao, Qiang; Niu, Yongchao; Yue, Zhen; Naredo, Ma. Elizabeth B.; Talag, Jayson; Wang, Xueqiang; Li, Jinjie; Fang, Xiaodong; Yin, Ye; Glaszmann, Jean-Christophe; Zhang, Jianwei; Li, Jiayang; Hamilton, Ruaraidh Sackville; Wing, Rod A.; Ruan, Jue; Zhang, Gengyun; Wei, Chaochun; Alexandrov, Nickolai; McNally, Kenneth L.; Li, Zhikang and Leung, Hei. 2018. Genomic variation in 3,010 diverse accessions of Asian cultivated rice. Nature, Volume 557 no. 7703 p. 43-49
dc.subjectcultivation
dc.subjectgenetic variation
dc.subjectgenomics
dc.subjectindels
dc.subjectintrogression
dc.subjectsingle nucleotide polymorphism
dc.subjectvarieties
dc.titleGenomic variation in 3,010 diverse accessions of Asian cultivated rice
dc.typeJournal Article

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Instituto Internacional de Investigación del Arroz (IRRI)