From bits to bites: advancement of the germinate platform to support genetic resources collections and pre‐breeding informatics for crop wild relatives

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dc.creatorRaubach, Sebastian
dc.creatorKilian, Benjamin
dc.creatorDreher, Kate
dc.creatorAmri, Ahmed
dc.creatorBassi, Filippo M.
dc.creatorBoukar, Ousmane
dc.creatorCook, Douglas
dc.creatorCruickshank, Alan
dc.creatorFatokun, Christian
dc.creatorEl Haddad, Noureddine
dc.creatorHumphries, Alan
dc.creatorJordan, David
dc.creatorKehel, Zakaria
dc.creatorKumar, Shiv
dc.creatorLabarosa, Sandy Jan
dc.creatorNguyen, Loi Huu
dc.creatorMace, Emma
dc.creatorMcCouch, Susan
dc.creatorMcNally, Ken
dc.creatorMarshall, David F.
dc.creatorMikwa, Erick Owuor
dc.creatorMilne, Iain
dc.creatorOdeny, Damaris Achieng
dc.creatorPlazas, Mariola
dc.creatorProhens, Jaime
dc.creatorRieseberg, Loren H.
dc.creatorSchafleitner, Roland
dc.creatorSharma, Shivali
dc.creatorStephen, Gordon
dc.creatorTin, Huynh Quang
dc.creatorTogola, Abou
dc.creatorWarschefsky, Emily
dc.creatorWerner, Peter
dc.creatorShaw, Paul D.
dc.date2021-05
dc.date2024-12-19T12:53:53Z
dc.date2024-12-19T12:53:53Z
dc.date.accessioned2026-06-27T15:52:56Z
dc.descriptionManagement and distribution of experimental data from prebreeding projects is important to ensure uptake of germplasm into breeding and research programs. Being able to access and share this data in standard formats is essential. The adoption of a common informatics platform for crops that may have limited resources brings economies of scale, allowing common informatics components to be used across multiple species. The close integration of such a platform with commonly used breeding software, visualization, and analysis tools reduces the barrier for entry to researchers and provides a common framework to facilitate collaborations and data sharing. This work presents significant updates to the Germinate platform and highlights its value in distributing prebreeding data for 14 crops as part of the project ‘Adapting Agriculture to Climate Change: Collecting, Protecting and Preparing Crop Wild Relatives’ (hereafter Crop Trust Crop Wild Relatives project) led by the Crop Trust (https://www.cwrdiversity.org). The addition of data on these species compliments data already publicly available in Germinate. We present a suite of updated Germinate features using examples from these crop species and their wild relatives. The use of Germinate within the Crop Trust Crop Wild Relatives project demonstrates the usefulness of the system and the benefits a shared informatics platform provides. These data resources provide a foundation on which breeding and research communities can develop additional online resources for their crops, harness new data as it becomes available, and benefit collectively from future developments of the Germinate platform.
dc.identifierhttps://hdl.handle.net/10568/164452
dc.identifier.urihttp://hdl.handle.net/123456789/116278
dc.languageen
dc.publisherWiley
dc.rightsOpen Access
dc.sourceRaubach, S., Kilian, B., Dreher, K., Amri, A., Bassi, F.M., Boukar, O., Cook, D., Cruickshank, A., Fatokun, C., El Haddad, N., Humphries, A., Jordan, D., Kehel, Z., Kumar, S., Labarosa, S.J., Nguyen, Loi Huu, Mace, E., McCouch, S., McNally, K., Marshall, D.F., Mikwa, E.O., Milne, I., Odeny, D.A., Plazas, M., Prohens, J., Rieseberg, L.H., Schafleitner, R., Sharma, S., Stephen, G., Tin, Huynh Quang, Togola, A., Warschefsky, E., Werner, P., and Shaw, P.D. 2020. From bits to bites: advancement of the germinate platform to support genetic resources collections and pre‐breeding informatics for crop wild relatives. Crop Science, Volume 61 no. 3 p. 1538-1566
dc.subjectagronomy and crop science
dc.titleFrom bits to bites: advancement of the germinate platform to support genetic resources collections and pre‐breeding informatics for crop wild relatives
dc.typeJournal Article

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Instituto Internacional de Agricultura Tropical (IITA)