The phased Solanum okadae genome and Petota pangenome analysis of 23 other potato wild relatives and hybrids

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dc.creatorAchakkagari, S.R.
dc.creatorBozan, I.
dc.creatorCamargo-Tavares, J.C.
dc.creatorMcCoy, H.J.
dc.creatorPortal, L.
dc.creatorSoto, J.
dc.creatorBizimungu, B.
dc.creatorAnglin, N.L.
dc.creatorManrique, N.C.
dc.creatorLindqvist-Kreuze, H.
dc.creatorTai, H.H.
dc.creatorStromvik, M.V.
dc.date2024-05-04
dc.date2024-05-13T16:17:38Z
dc.date2024-05-13T16:17:38Z
dc.date.accessioned2026-06-27T17:56:37Z
dc.descriptionPotato is an important crop in the genus Solanum section Petota. Potatoes are susceptible to multiple abiotic and biotic stresses and have undergone constant improvement through breeding programs worldwide. Introgression of wild relatives from section Petota with potato is used as a strategy to enhance the diversity of potato germplasm. The current dataset contributes a phased genome assembly for diploid S. okadae, and short read sequences and de novo assemblies for the genomes of 16 additional wild diploid species in section Petota that were noted for stress resistance and were of interest to potato breeders. Genome sequence data for three additional genomes representing polyploid hybrids with cultivated potato, and an additional genome from non-tuberizing S. etuberosum, which is outside of section Petota, were also included. High quality short reads assemblies were achieved with genome sizes ranging from 575 to 795 Mbp and annotations were performed utilizing transcriptome sequence data. Genomes were compared for presence/absence of genes and phylogenetic analyses were carried out using plastome and nuclear sequences.
dc.identifierhttps://hdl.handle.net/10568/141826
dc.identifier.urihttp://hdl.handle.net/123456789/150105
dc.languageen
dc.publisherSpringer
dc.rightsOpen Access
dc.sourceAchakkagari, S.R.; Bozan, I.; Camargo-Tavares, J.C.; McCoy, H.J.; Portal, L.; Soto, J.; Bizimungu, B.; Anglin, N.L.; Manrique‐Carpintero, N.C.; Lindqvist‐Kreuze, H.; Tai, H.H.; Strömvik, M.V. 2024. The phased Solanum okadae genome and Petota pangenome analysis of 23 other potato wild relatives and hybrids. Scientific Data. ISSN 2052-4463. 11(1). 17 p. https://doi.org/10.1038/s41597-024-03300-5
dc.subjectassemblies
dc.subjectspecies diversity
dc.subjectevolution
dc.subjectpotatoes
dc.subjectgene banks
dc.subjectgenetic resources
dc.subjectgenomics
dc.titleThe phased Solanum okadae genome and Petota pangenome analysis of 23 other potato wild relatives and hybrids
dc.typeJournal Article

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