Twelve Platinum-Standard Reference Genomes Sequences (PSRefSeq) that complete the full range of genetic diversity of Asian rice

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dc.creatorZhou, Yong
dc.creatorChebotarov, Dmytro
dc.creatorKudrna, Dave
dc.creatorLlaca, Victor
dc.creatorLee, Seunghee
dc.creatorRajasekar, Shanmugam
dc.creatorMohammed, Nahed
dc.creatorAl-Bader, Noor
dc.creatorSobel-Sorenson, Chandler
dc.creatorParakkal, Praveena
dc.creatorArbelaez, Lady Johanna
dc.creatorFranco, Natalia
dc.creatorAlexandrov, Nickolai
dc.creatorHamilton, Ruaraidh Sackville
dc.creatorLeung, Hei
dc.creatorMauleon, Ramil
dc.creatorLorieux, Mathias
dc.creatorZuccolo, Andrea
dc.creatorMcNally, Kenneth
dc.creatorZhang, Jianwei
dc.creatorWing, Rod A.
dc.date2019-12-31
dc.date2024-12-19T12:54:05Z
dc.date2024-12-19T12:54:05Z
dc.date.accessioned2026-06-27T04:08:32Z
dc.descriptionAs the human population grows from 7.8 billion to 10 billion over the next 30 years, breeders must do everything possible to create crops that are highly productive and nutritious, while simultaneously having less of an environmental footprint. Rice will play a critical role in meeting this demand and thus, knowledge of the full repertoire of genetic diversity that exists in germplasm banks across the globe is required. To meet this demand, we describe the generation, validation and preliminary analyses of transposable element and long-range structural variation content of 12 near-gap-free reference genome sequences (RefSeqs) from representatives of 12 of 15 subpopulations of cultivated rice. When combined with 4 existing RefSeqs, that represent the 3 remaining rice subpopulations and the largest admixed population, this collection of 16 Platinum Standard RefSeqs (PSRefSeq) can be used as a pan-genome template to map resequencing data to detect virtually all standing natural variation that exists in the pan-cultivated rice genome.
dc.identifierhttps://hdl.handle.net/10568/164581
dc.identifier.urihttp://hdl.handle.net/123456789/22901
dc.languageen
dc.publisherCold Spring Harbor Laboratory
dc.sourceZhou, Yong; Chebotarov, Dmytro; Kudrna, Dave; Llaca, Victor; Lee, Seunghee; Rajasekar, Shanmugam; Mohammed, Nahed; Al-Bader, Noor; Sobel-Sorenson, Chandler; Parakkal, Praveena; Arbelaez, Lady Johanna; Franco, Natalia; Alexandrov, Nickolai; Hamilton, N. Ruaraidh Sackville; Leung, Hei; Mauleon, Ramil; Lorieux, Mathias; Zuccolo, Andrea; McNally, Kenneth; Zhang, Jianwei and Wing, Rod A. 2019. Twelve Platinum-Standard Reference Genomes Sequences (PSRefSeq) that complete the full range of genetic diversity of Asian rice. bioRxiv, 27 pages
dc.titleTwelve Platinum-Standard Reference Genomes Sequences (PSRefSeq) that complete the full range of genetic diversity of Asian rice
dc.typePreprint

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Instituto Internacional de Investigación del Arroz (IRRI)