Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.)

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dc.creatorTung, Chih-Wei
dc.creatorZhao, Keyan
dc.creatorWright, Mark H.
dc.creatorAli, M. Liakat
dc.creatorJung, Janelle
dc.creatorKimball, Jennifer
dc.creatorTyagi, Wricha
dc.creatorThomson, Michael J.
dc.creatorMcNally, Kenneth
dc.creatorLeung, Hei
dc.creatorKim, Hyunjung
dc.creatorAhn, Sang-Nag
dc.creatorReynolds, Andy
dc.creatorScheffler, Brian
dc.creatorEizenga, Georgia
dc.creatorMcClung, Anna
dc.creatorBustamante, Carlos
dc.creatorMcCouch, Susan R.
dc.date2010-12
dc.date2024-12-19T12:55:44Z
dc.date2024-12-19T12:55:44Z
dc.date.accessioned2026-06-27T04:14:24Z
dc.descriptionWe present an overview of a research platform that provides essential germplasm, genotypic and phenotypic data and analytical tools for dissecting phenotype–genotype associations in rice. These resources include a diversity panel of 400 Oryza sativa and 100 Oryza rufipogon accessions that have been purified by single seed descent, a custom-designed Affymetrix array consisting of 44,100 SNPs, an Illumina GoldenGate assay consisting of 1,536 SNPs, and a suite of low-resolution 384-SNP assays for the Illumina BeadXpress Reader that are designed for applications in breeding, genetics and germplasm management. Our long-term goal is to empower basic research discoveries in rice by linking sequence diversity with physiological, morphological, and agronomic variation. This research platform will also help increase breeding efficiency by providing a database of diversity information that will enable researchers to identify useful DNA polymorphisms in genes and germplasm of interest and convert that information into cost-effective tools for applied plant improvement.
dc.identifierhttps://hdl.handle.net/10568/165995
dc.identifier.urihttp://hdl.handle.net/123456789/26195
dc.languageen
dc.publisherSpringer
dc.rightsOpen Access
dc.sourceTung, Chih-Wei; Zhao, Keyan; Wright, Mark H.; Ali, M. Liakat; Jung, Janelle; Kimball, Jennifer; Tyagi, Wricha; Thomson, Michael J.; McNally, Kenneth; Leung, Hei; Kim, Hyunjung; Ahn, Sang-Nag; Reynolds, Andy; Scheffler, Brian; Eizenga, Georgia; McClung, Anna; Bustamante, Carlos and McCouch, Susan R. 2010. Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.). Rice, Volume 3 no. 4 p. 205-217
dc.subjectdatabases
dc.subjectgenetic diversity
dc.subjectgenetic markers
dc.subjectgenetic polymorphism
dc.subjectgenetic variation
dc.subjectgermplasm
dc.subjectlinkage disequilibrium
dc.subjectphenotypic variation
dc.subjectsingle nulceotide polymorphism
dc.subjectwild relatives
dc.subjectplant genetic resources
dc.subjectoryza rufipogon
dc.titleDevelopment of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.)
dc.typeJournal Article

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Instituto Internacional de Investigación del Arroz (IRRI)